SMTL ID : 8wec.2 (1 other biounit)

Crystal structure of Arabidopsis thaliana MIK2 ectodomain in complex with BAK1 ectodomain and SCOOP12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 8 residues within 4Å: Chain A: W.362, V.386, E.409, N.410, I.433 Chain B: D.50, T.52, L.53 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.433 NAG-NAG-BMA.6: 4 residues within 4Å: Chain A: G.355, G.377, N.380, R.404 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.2: 3 residues within 4Å: Chain A: V.155, E.157, N.179 No protein-ligand interaction detected (PLIP)

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 8 residues within 4Å: Chain A: N.534, S.558, S.559, Y.578, N.580, S.582, R.583, D.604 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.583 NAG-NAG.4: 3 residues within 4Å: Chain A: R.97, N.99, F.122 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 2 residues within 4Å: Chain A: N.633, N.657 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 1 residues within 4Å: Chain A: N.249 No protein-ligand interaction detected (PLIP)

2 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.7: 3 residues within 4Å: Chain A: P.280, N.284, T.305 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.305 NAG-FUC.8: 3 residues within 4Å: Chain A: P.496, E.497, N.500 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.496, A:E.497 Hydrogen bonds: A:N.500

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.10: 6 residues within 4Å: Chain A: S.91, L.92, S.94, P.118, N.119, K.143 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.92 NAG.11: 3 residues within 4Å: Chain A: P.238, N.239, N.263 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.238, A:N.263 NAG.12: 3 residues within 4Å: Chain A: T.62, N.63, E.106 No protein-ligand interaction detected (PLIP) NAG.13: 1 residues within 4Å: Chain A: N.323 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.323 NAG.14: 2 residues within 4Å: Chain A: N.463, N.487 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.465, A:N.487

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Y.X. et al., Mechanistic study of SCOOPs recognition by MIK2-BAK1 complex reveals the role of N-glycans in plant ligand-receptor-coreceptor complex formation. Nature Plants (2024)

Release Date

2024-11-06

Peptides

MDIS1-interacting receptor like kinase 2: A
BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1: B
SERINE-RICH ENDOGENOUS PEPTIDE (SCOOP): C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

MDIS1-interacting receptor like kinase 2

BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1

SERINE-RICH ENDOGENOUS PEPTIDE (SCOOP)

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