SMTL ID : 8wef.1

Crystal structure of Brassica napus MIK2 ectodomain in complex with Fusarium oxysporum SCOOPL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: R.50, N.52, T.54, D.77, Y.99 No protein-ligand interaction detected (PLIP)

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 6 residues within 4Å: Chain A: V.44, R.45, S.47, P.71, N.72, K.96 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 1 residues within 4Å: Chain A: N.250 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 4 residues within 4Å: Chain A: N.363, I.386, R.387, N.410 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.387, A:R.387 NAG-NAG.6: 8 residues within 4Å: Chain A: S.511, S.512, Y.531, N.533, S.535, R.536, T.555, D.557 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.536

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.3: 3 residues within 4Å: Chain A: V.108, K.130, N.132 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.108, A:K.130

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.7: 4 residues within 4Å: Chain A: N.562, D.564, G.565, N.586 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.565

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 2 residues within 4Å: Chain A: N.17, E.59 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.59 NAG.9: 3 residues within 4Å: Chain A: S.161, S.162, N.165 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Y.X. et al., Mechanistic study of SCOOPs recognition by MIK2-BAK1 complex reveals the role of N-glycans in plant ligand-receptor-coreceptor complex formation. Nature Plants (2024)

Release Date

2024-11-06

Peptides

MALE DISCOVERER 1-INTERACTING RECEPTOR-LIKE KINASE 2: A
a SCOOP-like peptide from F. oxysporum f. sp. conglutinans strain Fo5176: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

MALE DISCOVERER 1-INTERACTING RECEPTOR-LIKE KINASE 2

a SCOOP-like peptide from F. oxysporum f. sp. conglutinans strain Fo5176

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