SMTL ID : 8weh.1

Crystal structure of Brassica napus MIK2 ectodomain (N393A mutant)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

monomer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 4 residues within 4Å: Chain A: R.50, N.52, D.77, Y.99 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.5: 9 residues within 4Å: Chain A: S.511, S.512, Y.531, N.533, S.535, R.536, T.555, D.557, Q.583 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.536

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 6 residues within 4Å: Chain A: V.44, R.45, S.47, P.71, N.72, K.96 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 1 residues within 4Å: Chain A: N.250 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.3: 3 residues within 4Å: Chain A: V.108, K.130, N.132 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.108, A:K.130

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.6: 3 residues within 4Å: Chain A: N.562, D.564, N.586 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 2 residues within 4Å: Chain A: N.17, E.59 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.59 NAG.8: 3 residues within 4Å: Chain A: S.161, S.162, N.165 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Y.X. et al., Mechanistic study of SCOOPs recognition by MIK2-BAK1 complex reveals the role of N-glycans in plant ligand-receptor-coreceptor complex formation. Nature Plants (2024)

Release Date

2024-11-06

Peptides

MALE DISCOVERER 1-INTERACTING RECEPTOR-LIKE KINASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MALE DISCOVERER 1-INTERACTING RECEPTOR-LIKE KINASE 2