SMTL ID : 8wev.1

Crystal structure of Feruoyl-CoA Synthetase complexed with AMP from Amycolatopsis thermoflava

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-tetramer

Ligands

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 11 residues within 4Å: Chain A: G.270, A.271, P.272, G.291, Y.292, G.293, M.294, T.295, D.374, R.389, K.480 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.270, A:G.291, A:G.293, A:T.295, A:T.295, A:T.295, A:T.295, A:D.374, A:R.389, A:K.480 Salt bridges: A:K.480 pi-Stacking: A:Y.292, A:Y.292 AMP.5: 11 residues within 4Å: Chain B: G.270, A.271, P.272, G.291, Y.292, G.293, M.294, T.295, S.372, D.374, R.389 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.270, B:G.291, B:G.293, B:T.295, B:D.374, B:R.389 pi-Stacking: B:Y.292, B:Y.292 AMP.7: 11 residues within 4Å: Chain C: G.270, A.271, P.272, G.291, Y.292, G.293, M.294, T.295, D.374, R.389, K.480 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:G.270, C:G.291, C:G.293, C:T.295, C:T.295, C:T.295, C:T.295, C:D.374, C:R.389, C:K.480 Salt bridges: C:K.480 pi-Stacking: C:Y.292, C:Y.292 AMP.11: 11 residues within 4Å: Chain D: G.270, A.271, P.272, G.291, Y.292, G.293, M.294, T.295, S.372, D.374, R.389 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:G.270, D:G.291, D:G.293, D:T.295, D:D.374, D:R.389 pi-Stacking: D:Y.292, D:Y.292

8 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: R.357, E.359 No protein-ligand interaction detected (PLIP) MG.3: 3 residues within 4Å: Chain A: T.21, R.24, R.189 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain A: N.85, R.87, G.477 No protein-ligand interaction detected (PLIP) MG.6: 2 residues within 4Å: Chain B: R.357, E.359 No protein-ligand interaction detected (PLIP) MG.8: 2 residues within 4Å: Chain C: R.357, E.359 No protein-ligand interaction detected (PLIP) MG.9: 3 residues within 4Å: Chain C: T.21, R.24, R.189 No protein-ligand interaction detected (PLIP) MG.10: 3 residues within 4Å: Chain C: N.85, R.87, G.477 No protein-ligand interaction detected (PLIP) MG.12: 2 residues within 4Å: Chain D: R.357, E.359 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seok, J. et al., Structural analysis of feruloyl-CoA synthetase from Amycolatopsis thermoflava. To Be Published

Release Date

2024-09-25

Peptides

Feruloyl-CoA Synthetase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Feruloyl-CoA Synthetase