SMTL ID : 8wf7.1

The Crystal Structure of integrase from Biortus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: H.12, V.17, A.36, E.37 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.37 Salt bridges: A:H.12 SO4.2: 3 residues within 4Å: Chain A: T.11, H.12, K.104 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.11, A:H.12, A:N.100 Water bridges: A:C.10, A:K.104, A:K.104 Salt bridges: A:H.12, A:K.104 SO4.3: 6 residues within 4Å: Chain A: E.14, K.16, R.111, E.115, H.116, L.117 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.117 Water bridges: A:K.118 Salt bridges: A:K.16, A:H.116 SO4.4: 4 residues within 4Å: Chain A: A.114, E.115, H.116, T.119 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.115, A:H.116, A:T.119 Salt bridges: A:H.116 SO4.5: 4 residues within 4Å: Chain A: G.39, S.68, T.69, T.70 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.39, A:T.69, A:T.69, A:T.69, A:T.70, A:T.70 Water bridges: A:Q.40, A:Q.40 SO4.6: 6 residues within 4Å: Chain A: E.30, A.31, F.45, K.48, L.49, R.52 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.31 Salt bridges: A:K.48

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 4 residues within 4Å: Chain A: Y.28, N.129, H.130, G.142 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.28, A:N.129 Water bridges: A:S.140 Salt bridges: A:H.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., The Crystal Structure of integrase from Biortus. To Be Published

Release Date

2023-10-04

Peptides

Integrase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Integrase