SMTL ID : 8wfb.1

Cryo-EM structure of the dPspCas13b-ADAR2-crRNA-target RNA complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x IHP: INOSITOL HEXAKISPHOSPHATE

IHP.1: 18 residues within 4Å: Chain A: N.1215, I.1221, R.1224, R.1225, T.1337, K.1343, R.1346, G.1354, S.1355, K.1453, Y.1482, K.1486, Y.1492, K.1496, W.1511, E.1513, K.1514, D.1519 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:N.1215, A:R.1346, A:S.1355, A:Y.1482, A:Y.1492, A:E.1513, A:E.1513, A:K.1514 Salt bridges: A:R.1224, A:R.1225, A:R.1225, A:K.1343, A:K.1343, A:R.1346, A:R.1346, A:K.1453, A:K.1486, A:K.1486, A:K.1486, A:K.1496, A:K.1514

1 x ZN: ZINC ION

ZN.2: 6 residues within 4Å: Chain A: H.1218, E.1220, C.1275, K.1307, C.1340 Chain C: X.26 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.1218, A:C.1275, A:C.1340

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ishikawa, J. et al., Structural insights into RNA-guided RNA editing by the Cas13b-ADAR2 complex. Nat.Struct.Mol.Biol. (2025)

Release Date

2025-03-19

Peptides

dPspCas13b-ADAR2DD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

dPspCas13b-ADAR2DD