SMTL ID : 8wfi.1

human glycine transporter 1 in complex with glycine in occluded conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x GLY: GLYCINE(Non-covalent)

GLY.1: 12 residues within 4Å: Chain A: Y.17, A.18, G.20, L.21, G.22, N.23, Y.97, Y.271, S.272, W.277, T.373 Ligands: NA.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.21, A:G.22, A:Y.97, A:Y.271, A:T.373, A:T.373

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: G.22, F.27, Y.43, Q.268, S.272, S.308 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 6 residues within 4Å: Chain A: G.16, V.19, G.20, L.369, G.372, T.373 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.369, A:T.373 Water bridges: A:G.372 NA.4: 6 residues within 4Å: Chain A: A.18, V.19, N.23, S.272, N.304 Ligands: GLY.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Hydrogen bonds: A:G.20, A:N.23, A:N.304, G.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, Y. et al., Transport mechanism and pharmacology of the human GlyT1. Cell (2024)

Release Date

2024-04-03

Peptides

Isoform GlyT-1B of Sodium- and chloride-dependent glycine transporter 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Isoform GlyT-1B of Sodium- and chloride-dependent glycine transporter 1