SMTL ID : 8wfk.1

human glycine transporter 1 in complex with SSR504734 in outward facing conformation

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x W5O: SSR504734(Non-covalent)

W5O.1: 12 residues within 4Å: Chain A: W.70, R.71, Y.141, V.145, Q.313, Y.316, W.322, P.383, L.470, L.471, D.474, A.478 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.316, A:W.322, A:L.471 Hydrogen bonds: A:D.474 Halogen bonds: A:L.470

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: N.68, Y.88, Q.313, S.317, S.353 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: A.63, S.317 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.63 NA.4: 5 residues within 4Å: Chain A: G.61, V.64, G.65, L.414, T.418 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.61, A:T.418

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, Y. et al., Transport mechanism and pharmacology of the human GlyT1. Cell (2024)

Release Date

2024-04-03

Peptides

Sodium- and chloride-dependent glycine transporter 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Sodium- and chloride-dependent glycine transporter 1

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