SMTL ID : 8wfs.1

Cryo-EM structure of GPIb-IX Complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-2-1-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.41 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 1 residues within 4Å: Chain B: N.41 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 2 residues within 4Å: Chain E: N.40, N.41 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 2 residues within 4Å: Chain F: G.24, N.44 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.3: 2 residues within 4Å: Chain C: G.24, N.44 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.4: 1 residues within 4Å: Chain D: N.41 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shu, Z.M. et al., Cryo-Structure of GPIb-IX complex at 3.36 Angstroms resolution. To Be Published

Release Date

2024-12-25

Peptides

Platelet glycoprotein Ib beta chain: ABDE
Platelet glycoprotein IX: CF
Platelet glycoprotein Ib alpha chain: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
c

B
C

D
B

E
b

C
E

F
X

G
a

Membrane

We predict this structure to be a membrane protein.
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Platelet glycoprotein Ib beta chain

Platelet glycoprotein IX

Platelet glycoprotein Ib alpha chain