SMTL ID : 8wg3.1

mouse TMEM63b in LMNG-CHS micelle

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.40 Å

Oligo State

monomer

Ligands

3 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.1: 11 residues within 4Å: Chain A: R.512, H.516, Y.519, T.520, F.524, G.679, A.686, L.690, F.693 Ligands: Y01.2, Y01.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.519, A:F.524, A:A.686, A:L.690, A:F.693, A:F.693 Hydrogen bonds: A:N.682 Salt bridges: A:R.512, A:H.516 Y01.2: 6 residues within 4Å: Chain A: N.682, I.689, I.721, C.724, V.728 Ligands: Y01.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.689, A:V.728 Hydrogen bonds: A:N.682, A:V.728 Y01.3: 8 residues within 4Å: Chain A: F.442, R.512, T.513, H.516, T.520, F.524 Ligands: Y01.1, LBN.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.442, A:F.442, A:T.513, A:T.520, A:F.524, A:F.524 Salt bridges: A:R.512, A:R.512, A:H.516

1 x LBN: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine(Non-covalent)

LBN.4: 9 residues within 4Å: Chain A: W.430, W.431, L.435, N.438, H.504, W.505, T.506, T.513 Ligands: Y01.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.435, A:N.438 Hydrogen bonds: A:W.505, A:T.506 Salt bridges: A:H.504 pi-Cation interactions: A:W.430, A:W.505

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miyata, Y. et al., Membrane structure-responsive lipid scrambling by TMEM63B to control plasma membrane lipid distribution. Nat.Struct.Mol.Biol. (2025)

Release Date

2024-09-25

Peptides

CSC1-like protein 2,Green fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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CSC1-like protein 2,Green fluorescent protein

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