SMTL ID : 8wie.1

Peptide 10-1/FTH1-1 Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-24-mer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain B: E.51, E.86, H.89, Q.165 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.51, B:E.86 FE.3: 4 residues within 4Å: Chain H: E.51, E.86, H.89, Q.165 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:E.51, H:E.86 FE.5: 4 residues within 4Å: Chain N: E.51, E.86, H.89, Q.165 2 PLIP interactions: 2 interactions with chain N Metal complexes: N:E.51, N:E.86 FE.7: 4 residues within 4Å: Chain T: E.51, E.86, H.89, Q.165 2 PLIP interactions: 2 interactions with chain T Metal complexes: T:E.51, T:E.86

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 8 residues within 4Å: Chain B: L.193, H.197 Chain C: L.193, H.197 Chain P: L.193, H.197 Chain Q: L.193, H.197 No protein-ligand interaction detected (PLIP) CA.4: 8 residues within 4Å: Chain H: L.193, H.197 Chain I: L.193, H.197 Chain V: L.193, H.197 Chain W: L.193, H.197 No protein-ligand interaction detected (PLIP) CA.6: 8 residues within 4Å: Chain J: L.193, H.197 Chain K: L.193, H.197 Chain N: L.193, H.197 Chain O: L.193, H.197 No protein-ligand interaction detected (PLIP) CA.8: 8 residues within 4Å: Chain D: L.193, H.197 Chain E: L.193, H.197 Chain T: L.193, H.197 Chain U: L.193, H.197 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fu, D. et al., Self-assembling nanoparticle engineered from the ferritinophagy complex as a rabies virus vaccine candidate. Nat Commun (2024)

Release Date

2024-09-25

Peptides

Peptide 10-1,Ferritin heavy chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
E

D
F

E
A

F
B

G
C

H
D

I
E

J
F

K
A

L
B

M
C

N
D

O
E

P
F

Q
A

R
B

S
C

T
D

U
E

V
F

W
A

X
B

Peptide 10-1,Ferritin heavy chain