SMTL ID : 8wk6.1

Human AGT1-rBAT complex in the apo-state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

10 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.383, T.385 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: N.473, E.477, N.626, S.628 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 1 residues within 4Å: Chain A: N.564 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 1 residues within 4Å: Chain A: N.312 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 1 residues within 4Å: Chain A: N.546 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 2 residues within 4Å: Chain C: N.383, T.385 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 4 residues within 4Å: Chain C: N.473, E.477, N.626, S.628 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 1 residues within 4Å: Chain C: N.564 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 1 residues within 4Å: Chain C: N.312 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 1 residues within 4Å: Chain C: N.546 No protein-ligand interaction detected (PLIP)

2 x CA: CALCIUM ION(Non-covalent)

CA.11: 5 residues within 4Å: Chain A: N.265, D.335, F.369, L.370, E.372 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.335, A:D.335, A:F.369, A:L.370, A:E.372 CA.12: 5 residues within 4Å: Chain C: N.265, D.335, F.369, L.370, E.372 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.335, C:D.335, C:F.369, C:L.370, C:E.372

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, R.H. et al., Human AGT1-rBAT complex in the apo-state. To Be Published

Release Date

2025-04-02

Peptides

Amino acid transporter heavy chain SLC3A1: AC
Solute carrier family 7 member 13: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
D

B
B

D
A

Membrane

We predict this structure to be a membrane protein.
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Amino acid transporter heavy chain SLC3A1

Solute carrier family 7 member 13