SMTL ID : 8wm9.1

Fzd4/DEP complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-mer

Ligands

10 x Y01: CHOLESTEROL HEMISUCCINATE

Y01.1: 9 residues within 4Å: Chain A: F.311, S.344, S.345, I.349, W.352 Ligands: Y01.2, Y01.4, Y01.8, Y01.10 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.311, A:I.349 Hydrogen bonds: A:S.344 Y01.2: 9 residues within 4Å: Chain A: R.253, F.257, L.307, F.311, F.312, W.352 Ligands: Y01.1, Y01.8, Y01.9 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.307, A:F.311, A:F.312 Salt bridges: A:R.253, A:H.348 Y01.3: 5 residues within 4Å: Chain A: I.267, T.274 Chain B: R.366 Ligands: Y01.7, Y01.9 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Salt bridges: B:R.366 Hydrophobic interactions: A:I.267, A:T.274 Y01.4: 6 residues within 4Å: Chain A: R.366 Chain B: N.263, I.267, T.274 Ligands: Y01.1, Y01.8 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:I.267 Salt bridges: A:R.366 Y01.5: 4 residues within 4Å: Chain A: F.507 Chain B: I.349, I.360 Ligands: Y01.7 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:I.349, B:I.349, B:I.360 Y01.6: 8 residues within 4Å: Chain B: Y.250, F.257, L.307, S.344, H.348, W.352 Ligands: Y01.7, Y01.8 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.307, B:W.352 Hydrogen bonds: B:Y.250, B:S.344 Salt bridges: B:H.348, B:H.348 Y01.7: 9 residues within 4Å: Chain B: S.344, S.345, W.352, A.356, I.360 Ligands: Y01.3, Y01.5, Y01.6, Y01.9 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:I.360 Hydrogen bonds: B:S.344 Y01.8: 7 residues within 4Å: Chain A: L.363 Chain B: I.264, T.300 Ligands: Y01.1, Y01.2, Y01.4, Y01.6 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:K.298 Hydrophobic interactions: B:I.264 Y01.9: 9 residues within 4Å: Chain A: I.264, T.300, I.304 Chain B: L.297, K.298, L.363 Ligands: Y01.2, Y01.3, Y01.7 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.363, A:I.304 Salt bridges: B:K.298 Y01.10: 4 residues within 4Å: Chain B: L.242, I.243, S.245 Ligands: Y01.1 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.242, B:L.242 Hydrogen bonds: B:S.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qian, Y. et al., Structural basis of Frizzled 4 in recognition of Dishevelled 2 unveils mechanism of WNT signaling activation. Nat Commun (2024)

Release Date

2024-09-11

Peptides

Frizzled-4: AB
Segment polarity protein dishevelled homolog DVL-2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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Frizzled-4

Segment polarity protein dishevelled homolog DVL-2

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