SMTL ID : 8wms.1

Crystal structure of human DPPA3 in complex with human UHRF1 PHD domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.4, C.7, C.15, C.18 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.4, A:C.7, A:C.15, A:C.18 ZN.2: 4 residues within 4Å: Chain A: C.20, C.23, H.43, C.46 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.20, A:C.23, A:H.43, A:C.46 ZN.3: 4 residues within 4Å: Chain A: C.35, C.38, C.62, C.65 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.35, A:C.38, A:C.62, A:C.65 ZN.4: 2 residues within 4Å: Chain A: H.21, E.64 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.21, A:E.64, A:E.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shiraishi, N. et al., Structure of human DPPA3 bound to the UHRF1 PHD finger reveals its functional and structural differences from mouse DPPA3. Commun Biol (2024)

Release Date

2024-07-31

Peptides

E3 ubiquitin-protein ligase UHRF1: A
Developmental pluripotency-associated protein 3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase UHRF1

Developmental pluripotency-associated protein 3

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