SMTL ID : 8wo0.1

CryoEM structure of ZIKV rsNS1 filament

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-10-mer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 4 residues within 4Å: Chain A: R.191, N.207, D.208, R.211 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.208, A:D.208 NAG.2: 4 residues within 4Å: Chain B: R.191, N.207, D.208, R.211 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.207, B:N.207 NAG.3: 4 residues within 4Å: Chain C: R.191, N.207, D.208, R.211 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.207, C:N.207, C:R.211 NAG.4: 5 residues within 4Å: Chain D: R.191, K.206, N.207, D.208, R.211 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:R.191, D:R.191, D:K.206, D:N.207, D:D.208, D:D.208, D:D.208 NAG.5: 2 residues within 4Å: Chain E: N.207, D.208 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:N.207, E:D.208, E:D.208 NAG.6: 2 residues within 4Å: Chain F: N.207, D.208 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.207 NAG.7: 2 residues within 4Å: Chain G: R.191, N.207 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:N.207, G:N.207 NAG.8: 5 residues within 4Å: Chain H: R.191, K.206, N.207, D.208, R.211 4 PLIP interactions: 4 interactions with chain H Hydrogen bonds: H:R.191, H:R.191, H:K.206, H:D.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chew, B.L.A. et al., Structural basis of Zika virus NS1 multimerization and human antibody recognition. Npj Viruses (2024)

Release Date

2024-05-08

Peptides

Non-structural protein 1: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
L

C
B

D
C

E
M

F
N

G
D

H
E

I
F

J
G

Non-structural protein 1