- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-dimer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.5: 4 residues within 4Å:- Chain A: N.67, Y.68, T.69, Q.142
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.67, A:T.69
NAG.6: 3 residues within 4Å:- Chain A: D.73, T.135, N.136
No protein-ligand interaction detected (PLIP)NAG.12: 4 residues within 4Å:- Chain B: N.67, Y.68, T.69, Q.142
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.67, B:T.69
NAG.13: 3 residues within 4Å:- Chain B: D.73, T.135, N.136
No protein-ligand interaction detected (PLIP)- 8 x CLR: CHOLESTEROL(Non-covalent)
CLR.7: 3 residues within 4Å:- Chain A: A.760, Y.764
- Ligands: CLR.8
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:A.760, A:Y.764
CLR.8: 10 residues within 4Å:- Chain A: S.716, Y.717, G.720, C.724, L.727, L.728, L.763, F.766, F.767
- Ligands: CLR.7
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.727, A:L.763, A:L.763, A:F.766, A:F.767, A:F.767
CLR.9: 3 residues within 4Å:- Chain A: I.464, V.491
- Ligands: CLR.10
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:I.464, A:V.491
CLR.10: 5 residues within 4Å:- Chain A: G.490, I.498, N.501, L.502
- Ligands: CLR.9
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:I.498, A:L.502
CLR.14: 7 residues within 4Å:- Chain B: L.489, F.495, I.498, N.501, L.502, A.560
- Ligands: CLR.17
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.489, B:F.495, B:N.501, B:L.502, B:A.560
CLR.15: 5 residues within 4Å:- Chain B: A.756, A.760, Y.764, Q.768
- Ligands: CLR.16
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:Y.764, B:Y.764
CLR.16: 9 residues within 4Å:- Chain B: S.716, Y.717, G.720, C.724, L.727, L.763, F.766, F.767
- Ligands: CLR.15
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:Y.717, B:L.727, B:L.727, B:L.763, B:L.763, B:F.766, B:F.767, B:F.767
CLR.17: 4 residues within 4Å:- Chain B: I.464, T.468, V.491
- Ligands: CLR.14
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:I.464, B:V.491
- 2 x ZN: ZINC ION(Non-covalent)
ZN.11: 4 residues within 4Å:- Chain A: H.563, D.574, H.796, H.800
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:H.563, A:H.796, A:H.800
ZN.18: 4 residues within 4Å:- Chain B: H.563, D.574, H.796, H.800
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.563, B:D.574, B:H.796, B:H.800
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, W. et al., Structural insights into cholesterol transport and hydrolase activity of a putative human RNA transport protein SIDT1. Cell Discov (2024)
- Release Date
- 2024-03-20
- Peptides
- SID1 transmembrane family member 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-dimer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x CLR: CHOLESTEROL(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, W. et al., Structural insights into cholesterol transport and hydrolase activity of a putative human RNA transport protein SIDT1. Cell Discov (2024)
- Release Date
- 2024-03-20
- Peptides
- SID1 transmembrane family member 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.