SMTL ID : 8wp5.1

Crystal structure of LbUGT1 in complex with UDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 14 residues within 4Å: Chain A: C.290, G.292, S.293, W.359, A.360, Q.362, H.377, G.379, W.380, N.381, S.382, E.385, Y.399, Q.402 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.293, A:A.360, A:A.360, A:Q.362, A:G.379, A:N.381, A:N.381, A:S.382, A:E.385, A:Y.399 Water bridges: A:W.380 Salt bridges: A:H.377, A:H.377 pi-Stacking: A:W.359

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: P.361, Q.362, V.363, A.364 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, S.Y. et al., Functional and structural dissection of glycosyltransferases underlying the glycodiversity of wolfberry-derived bioactive ingredients lycibarbarspermidines. Nat Commun (2024)

Release Date

2024-05-22

Peptides

Glycosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyltransferase