SMTL ID : 8wpe.1

Structure of monkeypox virus polymerase complex F8-A22-E4-H5 (tag-free A22) with exogenous DNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-4-mer

Ligands

1 x D3T: 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE(Non-covalent)

D3T.1: 17 residues within 4Å: Chain A: D.549, Y.550, N.551, S.552, L.553, Y.554, R.634, K.661, I.662, N.665, Y.668, T.752, D.753 Chain H: C.35 Chain I: A.13, G.14 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.554, A:Y.554, A:I.662 Hydrogen bonds: A:Y.550, A:S.552, A:L.553, A:N.665 Salt bridges: A:R.634, A:K.638, A:K.661, A:K.661, A:K.661

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.549, Y.550, D.753 Ligands: D3T.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.549, A:Y.550, A:D.753

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X. et al., Structural insights into the assembly and mechanism of mpox virus DNA polymerase complex F8-A22-E4-H5. Mol.Cell (2023)

Release Date

2023-11-29

Peptides

DNA polymerase: A
A22R DNA polymerase processivity factor: B
E4R Uracil-DNA glycosylase, DNA polymerase processivity factor: C
H5R late gene transcription factor: DEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

DNA polymerase

A22R DNA polymerase processivity factor

E4R Uracil-DNA glycosylase, DNA polymerase processivity factor

H5R late gene transcription factor

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