SMTL ID : 8wqo.1

Crystal structure of BRD4-BD1 bound with DI106

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.13 Å

Oligo State

monomer

Ligands

1 x X3L: (3~{R})-6-[[4-(3,5-dimethyl-1~{H}-pyrazol-4-yl)pyrimidin-2-yl]amino]-1,3-dimethyl-4-propan-2-yl-3~{H}-quinoxalin-2-one(Non-covalent)

X3L.1: 11 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, Y.56, C.95, Y.98, N.99, I.105 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:P.41, A:V.46, A:V.46, A:L.51, A:L.51, A:Y.56, A:Y.98, A:I.105 Hydrogen bonds: A:N.99 pi-Stacking: A:W.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lyu, K. et al., Structure-Based Rational Design and Evaluation of BET-Aurora Kinase Dual-Inhibitors for Treatment of Cancers. J.Med.Chem. (2025)

Release Date

2024-07-24

Peptides

Isoform C of Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform C of Bromodomain-containing protein 4

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