SMTL ID : 8wrl.1

XBB.1.5 RBD in complex with ACE2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: S.402, N.528 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.402, A:S.402, A:S.402, A:N.528 NAG.2: 2 residues within 4Å: Chain A: K.8, N.72 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.72 NAG.3: 1 residues within 4Å: Chain A: N.304 No protein-ligand interaction detected (PLIP) NAG.4: 3 residues within 4Å: Chain A: N.35, T.37, Q.322 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.37 NAG.5: 2 residues within 4Å: Chain B: H.40, N.44 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jian, F. et al., Convergent evolution of SARS-CoV-2 XBB lineages on receptor-binding domain 455-456 synergistically enhances antibody evasion and ACE2 binding. Plos Pathog. (2023)

Release Date

2023-11-29

Peptides

Processed angiotensin-converting enzyme 2: A
Spike protein S1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Processed angiotensin-converting enzyme 2

Spike protein S1

Related Entries With Identical Sequence