SMTL ID : 8wtd.1

XBB.1.5.10 RBD in complex with ACE2

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: H.417, S.420, D.543, S.545, N.546 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.420, A:S.420, A:S.545, A:N.546 NAG.2: 2 residues within 4Å: Chain A: K.26, N.90 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.90 NAG.3: 4 residues within 4Å: Chain A: K.309, E.312, N.322, M.323 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.309, A:N.322 NAG.4: 3 residues within 4Å: Chain A: N.53, T.55, Q.340 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jian, F. et al., Convergent evolution of SARS-CoV-2 XBB lineages on receptor-binding domain 455-456 synergistically enhances antibody evasion and ACE2 binding. Plos Pathog. (2023)

Release Date

2023-12-13

Peptides

Angiotensin-converting enzyme 2: A
Spike protein S2': B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Angiotensin-converting enzyme 2

Spike protein S2'

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