SMTL ID : 8wtv.1

Cryo-EM structure of noradrenaline transporter in complex with noradrenaline

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: N.27, S.267, L.268, N.299 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.299 NA.2: 6 residues within 4Å: Chain A: V.23, D.24, T.215, L.364, D.367, S.368 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.24, A:D.367

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain A: N.27, F.31, Y.47, Q.263, S.267, S.303 Ligand excluded by PLIP

2 x E5E: Noradrenaline(Non-covalent)

E5E.4: 6 residues within 4Å: Chain A: A.94, G.98, Y.101, F.272, S.368, G.372 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.94, A:Y.101 pi-Stacking: A:Y.101 E5E.5: 7 residues within 4Å: Chain A: Y.36, G.39, A.242, R.250, I.325, E.326, E.331 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.36, A:E.326 Hydrogen bonds: A:R.250, A:R.250, A:E.326, A:E.326

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 2 residues within 4Å: Chain A: S.131, N.133 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, T. et al., Transport and inhibition mechanisms of the human noradrenaline transporter. Nature (2024)

Release Date

2024-08-07

Peptides

Sodium-dependent noradrenaline transporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Sodium-dependent noradrenaline transporter

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