SMTL ID : 8wur.1

Crystal structure of SARS-Cov-2 main protease D48N mutant in complex with shikonin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

homo-dimer

Ligands

1 x FNO: 2-[(1R)-4-methyl-1-oxidanyl-pent-3-enyl]-5,8-bis(oxidanyl)naphthalene-1,4-dione(Covalent)

FNO.1: 9 residues within 4Å: Chain A: P.37, H.39, C.143, H.162, M.163, D.185, R.186, Q.187, Q.190 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Q.187 pi-Stacking: A:H.39, A:H.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Z. et al., Structural Basis for the Inhibition of SARS-CoV-2 M pro D48N Mutant by Shikonin and PF-07321332. Viruses (2023)

Release Date

2024-11-13

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3C-like proteinase nsp5