SMTL ID : 8wyw.1

Crystal structure of spleen tyrosine kinase (SYK) in complex with SKI-O-592 (free form of SKI-O-703, cevidoplenib)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x XFB: SKI-O-592(Non-covalent)

XFB.1: 20 residues within 4Å: Chain A: L.25, G.26, S.27, F.30, V.33, A.48, E.68, V.81, M.96, E.97, M.98, A.99, E.100, G.102, P.103, R.146, N.147, L.149, S.159, D.160 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.33, A:V.81, A:P.103, A:L.149 Hydrogen bonds: A:A.99, A:A.99, A:S.159 Salt bridges: A:D.160 XFB.3: 21 residues within 4Å: Chain B: L.25, G.26, S.27, F.30, V.33, A.48, E.68, V.81, M.96, E.97, M.98, A.99, E.100, G.102, P.103, K.106, R.146, N.147, L.149, S.159, D.160 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:V.33, B:V.81, B:L.149, B:L.149 Hydrogen bonds: B:A.99, B:A.99, B:K.106, B:R.146, B:R.146, B:S.159 Salt bridges: B:D.160

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: L.233, G.236, R.238, Y.259 Chain B: T.46, M.98, E.100 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:G.236, A:R.238, A:R.238 Water bridges: A:E.234, B:K.35, B:M.98, B:M.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bong, S.M. et al., Crystal structure of spleen tyrosine kinase (Syk) in complex with SKI-O-592 (free form of SKI-O-703, cevidoplenib). To Be Published

Release Date

2024-11-06

Peptides

Tyrosine-protein kinase SYK: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosine-protein kinase SYK

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