- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-trimer
- Ligands
- 15 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 5 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-MAN.10: 2 residues within 4Å:- Chain B: N.716, L.921
No protein-ligand interaction detected (PLIP)NAG-NAG-MAN.11: 4 residues within 4Å:- Chain B: N.800, S.802, Q.803, Q.934
No protein-ligand interaction detected (PLIP)NAG-NAG-MAN.17: 4 residues within 4Å:- Chain C: N.716, L.921, Q.925, Q.1070
No protein-ligand interaction detected (PLIP)NAG-NAG-MAN.18: 3 residues within 4Å:- Chain C: N.800, S.802, Q.803
No protein-ligand interaction detected (PLIP)NAG-NAG-MAN.20: 4 residues within 4Å:- Chain C: N.1097, T.1099, H.1100, F.1102
No protein-ligand interaction detected (PLIP)- 21 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
NAG.22: 2 residues within 4Å:- Chain A: Y.30, N.63
Ligand excluded by PLIPNAG.23: 3 residues within 4Å:- Chain A: N.333, P.581, Q.582
Ligand excluded by PLIPNAG.24: 2 residues within 4Å:- Chain A: N.605, T.606
Ligand excluded by PLIPNAG.25: 2 residues within 4Å:- Chain A: H.657, N.659
Ligand excluded by PLIPNAG.26: 3 residues within 4Å:- Chain A: N.708, I.1129
- Chain B: D.795
Ligand excluded by PLIPNAG.27: 3 residues within 4Å:- Chain A: N.124, T.126, N.127
Ligand excluded by PLIPNAG.28: 3 residues within 4Å:- Chain A: N.618, T.620, Q.646
Ligand excluded by PLIPNAG.29: 2 residues within 4Å:- Chain B: Y.30, N.63
Ligand excluded by PLIPNAG.30: 2 residues within 4Å:- Chain B: N.333, Q.582
Ligand excluded by PLIPNAG.31: 1 residues within 4Å:- Chain B: N.605
Ligand excluded by PLIPNAG.32: 2 residues within 4Å:- Chain B: H.657, N.659
Ligand excluded by PLIPNAG.33: 1 residues within 4Å:- Chain B: N.708
Ligand excluded by PLIPNAG.34: 5 residues within 4Å:- Chain B: N.124, A.125, T.126, N.127, V.129
Ligand excluded by PLIPNAG.35: 4 residues within 4Å:- Chain A: R.459
- Chain B: T.110, N.236, T.238
Ligand excluded by PLIPNAG.36: 2 residues within 4Å:- Chain C: Y.30, N.63
Ligand excluded by PLIPNAG.37: 3 residues within 4Å:- Chain C: N.333, Q.582, T.583
Ligand excluded by PLIPNAG.38: 1 residues within 4Å:- Chain C: N.605
Ligand excluded by PLIPNAG.39: 2 residues within 4Å:- Chain C: H.657, N.659
Ligand excluded by PLIPNAG.40: 2 residues within 4Å:- Chain A: D.795
- Chain C: N.708
Ligand excluded by PLIPNAG.41: 4 residues within 4Å:- Chain C: N.124, T.126, N.127, V.129
Ligand excluded by PLIPNAG.42: 2 residues within 4Å:- Chain C: N.166, N.167
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yadav, S. et al., Factors affecting macromolecule orientations in thin films formed in cryo-EM. Acta Crystallogr D Struct Biol (2024)
- Release Date
- 2024-07-10
- Peptides
- Spike glycoprotein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-trimer
- Ligands
- 15 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 5 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 21 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yadav, S. et al., Factors affecting macromolecule orientations in thin films formed in cryo-EM. Acta Crystallogr D Struct Biol (2024)
- Release Date
- 2024-07-10
- Peptides
- Spike glycoprotein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C