SMTL ID : 8wzq.1

Crystal structure of SARS-Cov-2 main protease V186F mutant in complex with CCF0058981

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

homo-dimer

Ligands

2 x XIU: 2-(benzotriazol-1-yl)-~{N}-[(3-chlorophenyl)methyl]-~{N}-[4-(1~{H}-imidazol-5-yl)phenyl]ethanamide

XIU.1: 19 residues within 4Å: Chain A: T.23, H.39, C.42, T.43, S.44, M.47, F.138, L.139, N.140, C.143, H.161, H.162, M.163, E.164, F.184, D.185, R.186, Q.187, Q.190 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.140, A:Q.187 Hydrogen bonds: A:E.164 XIU.2: 20 residues within 4Å: Chain B: T.23, H.39, C.42, T.43, S.44, M.47, F.138, L.139, N.140, S.142, C.143, H.161, H.162, M.163, E.164, F.184, D.185, R.186, Q.187, Q.190 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:N.140, B:M.163, B:E.164 Hydrogen bonds: B:T.23, B:E.164 pi-Stacking: B:H.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, H. et al., Crystal structure of SARS-CoV-2 main protease (M pro ) mutants in complex with the non-covalent inhibitor CCF0058981. Biochem.Biophys.Res.Commun. (2024)

Release Date

2024-04-17

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3C-like proteinase nsp5