SMTL ID : 8x0b.1

Human FL Metabotropic glutamate receptor 5, mGlu5-5M with Quisqualate and VU0424465

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.10 Å

Oligo State

homo-dimer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: R.214, N.216 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain B: R.214, N.216 No protein-ligand interaction detected (PLIP)

2 x QUS: (S)-2-AMINO-3-(3,5-DIOXO-[1,2,4]OXADIAZOLIDIN-2-YL)-PROPIONIC ACID(Non-covalent)

QUS.2: 13 residues within 4Å: Chain A: Y.70, W.106, G.156, S.158, S.179, T.181, Y.229, E.285, G.286, D.311, G.312, R.316, K.402 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Y.70, A:Y.70, A:S.158, A:S.179, A:T.181, A:T.181, A:G.286, A:D.311, A:R.316 Water bridges: A:R.67 QUS.5: 15 residues within 4Å: Chain B: Y.70, W.106, G.156, S.157, S.158, S.179, A.180, T.181, Y.229, E.285, G.286, D.311, G.312, R.316, K.402 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:Y.70, B:Y.70, B:S.158, B:T.181, B:T.181, B:T.181, B:G.286, B:R.316, B:K.402, B:K.402 Water bridges: B:S.179 pi-Stacking: B:W.106

2 x XQT: VU0424465(Non-covalent)

XQT.3: 17 residues within 4Å: Chain A: G.630, I.631, G.634, S.660, P.661, Y.665, L.750, W.791, F.794, V.795, Y.798, F.799, M.808, S.811, V.812, S.815, A.816 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:P.661, A:Y.665, A:L.750, A:W.791, A:F.794, A:V.795, A:F.799, A:V.812, A:V.812, A:A.816 Hydrogen bonds: A:S.811, A:S.811 Halogen bonds: A:G.630, A:I.631 XQT.6: 19 residues within 4Å: Chain B: G.630, I.631, G.634, S.660, P.661, S.664, Y.665, L.750, W.791, F.794, V.795, Y.798, F.799, T.807, M.808, S.811, V.812, S.815, L.819 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:I.631, B:P.661, B:P.661, B:Y.665, B:L.750, B:W.791, B:V.795, B:Y.798, B:Y.798, B:F.799, B:T.807, B:V.812, B:L.819 Hydrogen bonds: B:S.811, B:S.811 pi-Stacking: B:W.791 Halogen bonds: B:G.630

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vinothkumar, K.R. et al., Conformational diversity in class C GPCR positive allosteric modulation. To Be Published

Release Date

2024-11-06

Peptides

Metabotropic glutamate receptor 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Metabotropic glutamate receptor 5

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