SMTL ID : 8x0c.1

Human FL Metabotropic glutamate receptor 5, mGlu5-5M with quisqualate and VU0424465, conformer 1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.20 Å

Oligo State

homo-dimer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: R.188, N.190 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain B: R.188, N.190 No protein-ligand interaction detected (PLIP)

2 x QUS: (S)-2-AMINO-3-(3,5-DIOXO-[1,2,4]OXADIAZOLIDIN-2-YL)-PROPIONIC ACID(Non-covalent)

QUS.2: 15 residues within 4Å: Chain A: Y.44, W.80, G.130, S.131, S.132, S.153, A.154, T.155, Y.203, E.259, G.260, D.285, G.286, R.290, K.376 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Y.44, A:Y.44, A:S.132, A:T.155, A:T.155, A:G.260, A:D.285, A:R.290, A:K.376 pi-Stacking: A:W.80 QUS.5: 15 residues within 4Å: Chain B: Y.44, W.80, G.130, S.131, S.132, S.153, A.154, T.155, Y.203, E.259, G.260, D.285, G.286, R.290, K.376 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:Y.44, B:Y.44, B:S.132, B:T.155, B:T.155, B:T.155, B:G.260, B:D.285, B:R.290, B:K.376 pi-Stacking: B:W.80

2 x XQT: VU0424465(Non-covalent)

XQT.3: 18 residues within 4Å: Chain A: G.604, I.605, S.634, P.635, S.638, Y.639, L.724, W.765, F.768, V.769, Y.772, F.773, M.782, S.785, V.786, S.789, A.790, L.793 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:P.635, A:Y.639, A:L.724, A:W.765, A:F.768, A:V.769, A:Y.772, A:F.773, A:V.786, A:L.793 Hydrogen bonds: A:F.768, A:S.785, A:S.785 Halogen bonds: A:G.604 XQT.6: 16 residues within 4Å: Chain B: G.604, I.605, S.634, P.635, Y.639, L.724, W.765, F.768, V.769, Y.772, M.782, S.785, V.786, S.789, A.790, L.793 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:I.605, B:P.635, B:P.635, B:Y.639, B:L.724, B:W.765, B:F.768, B:V.769, B:Y.772, B:V.786, B:L.793 Hydrogen bonds: B:S.785, B:S.785 pi-Stacking: B:W.765 Halogen bonds: B:G.604

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vinothkumar, K.R. et al., Conformational diversity in class C GPCR positive allosteric modulation. To Be Published

Release Date

2024-11-06

Peptides

Metabotropic glutamate receptor 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Metabotropic glutamate receptor 5

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