SMTL ID : 8x0j.1 (1 other biounit)

old yellow enzymes-Q102A/Y169F/R215A/R308A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.11 Å

Oligo State

homo-dimer

Ligands

10 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: V.63, W.77, A.145, N.148, R.152 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.145, A:N.148 Salt bridges: A:R.152 PO4.2: 4 residues within 4Å: Chain A: R.274, Q.297, N.298, G.299 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.274 PO4.3: 7 residues within 4Å: Chain A: S.23, P.24, E.162, H.167, D.247, S.249, F.305 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.23 Salt bridges: A:H.167 PO4.4: 5 residues within 4Å: Chain A: R.273, D.277, I.278, P.279, D.302 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.277, A:D.277, A:I.278 Salt bridges: A:R.273 PO4.5: 3 residues within 4Å: Chain A: G.13, L.14, T.15 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.13, A:T.15, A:T.15 PO4.6: 5 residues within 4Å: Chain B: V.63, W.77, A.145, N.148, R.152 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.145, B:N.148 Salt bridges: B:R.152 PO4.7: 4 residues within 4Å: Chain B: R.274, Q.297, N.298, G.299 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.274 PO4.8: 7 residues within 4Å: Chain B: S.23, P.24, E.162, H.167, D.247, S.249, F.305 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.23 Salt bridges: B:H.167 PO4.9: 5 residues within 4Å: Chain B: R.273, D.277, I.278, P.279, D.302 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.277, B:I.278 Salt bridges: B:R.273 PO4.10: 3 residues within 4Å: Chain B: G.13, L.14, T.15 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.13, B:T.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lei, W. et al., Unlocking the function promiscuity of old yellow enzyme to catalyze asymmetric Morita-Baylis-Hillman reaction. To Be Published

Release Date

2024-07-10

Peptides

NADPH dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

NADPH dehydrogenase

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