SMTL ID : 8x2a.1

The Crystal Structure of BMX from Biortus.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x LTJ: 4-[(3S)-3-{[(2E)-but-2-enoyl]amino}piperidin-1-yl]-5-fluoro-2,3-dimethyl-1H-indole-7-carboxamide(Covalent)

LTJ.1: 17 residues within 4Å: Chain A: L.14, G.15, S.16, V.22, A.34, T.80, E.81, Y.82, I.83, S.84, G.86, C.87, L.89, N.90, R.131, L.134 Ligands: EDO.3 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.14, A:A.34, A:Y.82, A:L.89, A:R.131, A:L.134 Hydrogen bonds: A:T.80, A:E.81, A:I.83, A:I.83, A:C.87 Water bridges: A:S.16, A:N.90, A:S.144

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 3 residues within 4Å: Chain A: F.175, H.176, F.178 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.176

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: C.87, R.131, L.134, S.144, D.145 Ligands: LTJ.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.144, A:D.145 EDO.4: 3 residues within 4Å: Chain A: Y.233, Q.234, Y.237 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.234, A:Q.234 Water bridges: A:Y.233, A:Y.233 EDO.5: 3 residues within 4Å: Chain A: R.126, T.149, R.150 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.126, A:R.150 Water bridges: A:R.126

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 4 residues within 4Å: Chain A: S.198, K.201, P.225, H.226 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., The Crystal Structure of BMX from Biortus. To Be Published

Release Date

2023-12-27

Peptides

Cytoplasmic tyrosine-protein kinase BMX: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytoplasmic tyrosine-protein kinase BMX