SMTL ID : 8x4r.1

Pyruvate kinase M2 (PKM2) mutant in complex with phenylalanine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

homo-tetramer

Ligands

4 x K: POTASSIUM ION(Non-covalent)

K.1: 5 residues within 4Å: Chain A: N.75, S.77, D.113, T.114, S.243 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.77, A:D.113, A:T.114, H2O.2 K.3: 5 residues within 4Å: Chain B: N.75, S.77, D.113, T.114, S.243 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.77, B:D.113, B:T.114, H2O.7 K.5: 5 residues within 4Å: Chain C: N.75, S.77, D.113, T.114, S.243 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:S.77, C:D.113, C:T.114, H2O.13 K.6: 5 residues within 4Å: Chain D: N.75, S.77, D.113, T.114, S.243 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:S.77, D:D.113, D:T.114, H2O.19

3 x PHE: PHENYLALANINE(Non-covalent)

PHE.2: 11 residues within 4Å: Chain A: R.43, N.44, T.45, N.70, R.106, H.464, G.468, I.469, F.470, P.471, F.502 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.470, A:F.470, A:F.502 Hydrogen bonds: A:N.70, A:N.70, A:H.464 Water bridges: A:N.44, A:H.464 Salt bridges: A:R.43, A:R.106, A:H.464 PHE.4: 11 residues within 4Å: Chain B: R.43, N.44, T.45, N.70, R.106, H.464, G.468, I.469, F.470, P.471, F.502 9 PLIP interactions: 9 interactions with chain B, Hydrophobic interactions: B:F.470, B:F.470, B:F.502 Hydrogen bonds: B:N.70, B:N.70, B:H.464 Salt bridges: B:R.43, B:R.106, B:H.464 PHE.7: 10 residues within 4Å: Chain D: R.43, N.44, T.45, N.70, R.106, H.464, G.468, I.469, F.470, P.471 8 PLIP interactions: 7 interactions with chain D, 1 Ligand-Ligand interactions Hydrophobic interactions: D:F.470, D:F.470 Hydrogen bonds: D:N.70, D:H.464, D:I.469, F.7 Salt bridges: D:R.106, D:H.464

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, W.C. et al., Pyruvate kinase M2 (PKM2) mutant in complex with phenylalanine. To Be Published

Release Date

2024-11-20

Peptides

Pyruvate kinase PKM: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Pyruvate kinase PKM