SMTL ID : 8x5e.1

Cryo-EM structure of human XPR1 in open state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: N.173, R.342, E.372 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.173 Salt bridges: A:R.342 PO4.2: 1 residues within 4Å: Chain A: A.365 No protein-ligand interaction detected (PLIP)

6 x 6OU: [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate(Non-functional Binders)(Non-covalent)

6OU.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) 6OU.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) 6OU.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) 6OU.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) 6OU.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) 6OU.8: 1 residues within 4Å: Chain A: V.367 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.367

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, R. et al., Human XPR1 structures reveal phosphate export mechanism. Nature (2024)

Release Date

2024-07-03

Peptides

Solute carrier family 53 member 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Solute carrier family 53 member 1

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