SMTL ID : 8x5s.1

Crystal structure of shikimate kinase of Mycobacterium tuberculosis complex with shikimate-3-phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x S3P: SHIKIMATE-3-PHOSPHATE(Non-covalent)

S3P.1: 14 residues within 4Å: Chain A: P.11, K.15, D.34, I.45, F.49, F.57, R.58, G.79, G.80, G.81, R.117, P.118, L.119, R.136 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.49 Hydrogen bonds: A:D.34, A:G.80, A:R.117 Water bridges: A:D.32, A:D.32, A:G.79, A:A.82, A:V.116 Salt bridges: A:K.15, A:R.58, A:R.136

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: L.10, P.11, G.12, S.13, G.14, K.15, S.16 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.12, A:S.13, A:G.14, A:K.15, A:S.16 Water bridges: A:G.14, A:T.17, A:S.77, A:R.117, A:R.117 Salt bridges: A:K.15 SO4.3: 3 residues within 4Å: Chain A: R.66, A.90, A.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.90 Salt bridges: A:R.66 SO4.4: 7 residues within 4Å: Chain A: R.110, T.111, G.112, G.113, N.114, T.115, R.117 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.110, A:G.113, A:T.115, A:T.115, A:T.115 Salt bridges: A:R.117 SO4.5: 2 residues within 4Å: Chain A: R.89, R.142 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.89, A:A.90, A:R.142 Salt bridges: A:R.89, A:R.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yadav, A.K. et al., Crystal structure of shikimate kinase of Mycobacterium tuberculosis complex with shikimate-3-phosphate. To Be Published

Release Date

2024-11-20

Peptides

Shikimate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Shikimate kinase

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