SMTL ID : 8x5y.1

CryoEM structure of the histamine H1 receptor-BRIL/Anti BRIL Fab complex with astemizole

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x XB7: 1-[(4-fluorophenyl)methyl]-N-{1-[2-(4-methoxyphenyl)ethyl]piperidin-4-yl}-1H-benzimidazol-2-amine(Non-covalent)

XB7.1: 21 residues within 4Å: Chain A: N.73, Y.76, L.77, W.92, D.96, Y.97, S.100, T.101, I.104, W.147, T.183, A.184, N.187, F.188, W.333, Y.336, F.337, F.340, M.356, I.359, Y.363 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.76, A:W.92, A:Y.97, A:W.147, A:T.183, A:A.184, A:N.187, A:W.333, A:F.340 Salt bridges: A:D.96 pi-Stacking: A:Y.97, A:W.333, A:W.333, A:F.337, A:F.337, A:F.337

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, D. et al., Molecular mechanism of antihistamines recognition and regulation of the histamine H 1 receptor. Nat Commun (2024)

Release Date

2024-01-17

Peptides

Histamine H1 receptor,Soluble cytochrome b562: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Membrane

We predict this structure to be a membrane protein.
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Histamine H1 receptor,Soluble cytochrome b562

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