SMTL ID : 8x6y.1

Crystal structure of EfCDA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

homo-tetramer

Ligands

4 x CAC: CACODYLATE ION(Non-covalent)

CAC.1: 11 residues within 4Å: Chain A: V.30, C.57, A.58, E.59, I.87, S.88, P.89, C.90, C.93 Chain C: F.129 Ligands: ZN.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.58, A:C.90 CAC.3: 11 residues within 4Å: Chain B: V.30, C.57, A.58, E.59, I.87, S.88, P.89, C.90, C.93 Chain D: F.129 Ligands: ZN.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.58, B:C.90 CAC.5: 11 residues within 4Å: Chain A: F.129 Chain C: V.30, C.57, A.58, E.59, I.87, S.88, P.89, C.90, C.93 Ligands: ZN.6 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.58, C:C.90 CAC.7: 11 residues within 4Å: Chain B: F.129 Chain D: V.30, C.57, A.58, E.59, I.87, S.88, P.89, C.90, C.93 Ligands: ZN.8 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:A.58, D:C.90

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.57, C.90, C.93 Chain D: S.51 Ligands: CAC.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.57, A:C.90, A:C.93 ZN.4: 5 residues within 4Å: Chain B: C.57, C.90, C.93 Chain C: S.51 Ligands: CAC.3 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.57, B:C.90, B:C.93 ZN.6: 5 residues within 4Å: Chain B: S.51 Chain C: C.57, C.90, C.93 Ligands: CAC.5 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.57, C:C.90, C:C.93 ZN.8: 5 residues within 4Å: Chain A: S.51 Chain D: C.57, C.90, C.93 Ligands: CAC.7 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.57, D:C.90, D:C.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, L. et al., Deciphering the role of Enterococcus faecium cytidine deaminase in gemcitabine resistance of gallbladder cancer. J.Biol.Chem. (2024)

Release Date

2024-11-27

Peptides

EfCDA: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

EfCDA

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