SMTL ID : 8x72.1

The Crystal Structure of PLK1 from Biortus.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 13 residues within 4Å: Chain A: L.47, G.50, G.51, C.55, A.68, K.70, V.102, E.119, C.121, K.166, N.169, F.171, D.182 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:E.119, A:C.121, A:K.166, A:K.166, A:N.169, A:D.182, A:D.182 Water bridges: A:S.125, A:D.182 Salt bridges: A:K.70 pi-Stacking: A:F.171, A:F.171

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: H.81, C.200 Ligands: ACT.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.81, A:C.200, ACT.4

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 5 residues within 4Å: Chain A: K.166, L.167, G.168, N.204, Y.205 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.167, A:G.168, A:Y.205 ACT.4: 5 residues within 4Å: Chain A: H.81, Q.82, K.85, C.200 Ligands: ZN.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.82 Salt bridges: A:H.81, A:K.85

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 3 residues within 4Å: Chain A: Y.154, R.157, N.158 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.154, A:N.158 PEG.6: 5 residues within 4Å: Chain A: F.293, G.296, I.298, P.299, A.300 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.293, A:P.299

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 4 residues within 4Å: Chain A: R.124, E.128, K.131, R.132 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.124 EDO.8: 1 residues within 4Å: Chain A: K.213 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.213, A:K.213 EDO.9: 2 residues within 4Å: Chain A: Y.256, Q.271 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., The Crystal Structure of PLK1 from Biortus. To Be Published

Release Date

2023-12-27

Peptides

Serine/threonine-protein kinase PLK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase PLK1

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