SMTL ID : 8x7q.1

pFTAA-bound E46K alpha-synuclein fibrils

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-10-mer

Ligands

4 x 3LS: 3''',4'-bis(carboxymethyl)-2,2':5',2'':5'',2''':5''',2''''-quinquethiophene-5,5''''-dicarboxylic acid

3LS.1: 17 residues within 4Å: Chain A: G.86, I.88, K.96, D.98 Chain B: G.86, I.88, K.96 Chain E: G.86, I.88, K.96, D.98 Chain I: G.86, I.88, K.96 Chain J: G.86, I.88, K.96 13 PLIP interactions: 2 interactions with chain I, 4 interactions with chain E, 3 interactions with chain J, 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: I:I.88, E:I.88, J:I.88, A:I.88 Salt bridges: I:K.96, E:K.96, E:K.96, J:K.96, A:K.96, B:K.96 Hydrogen bonds: E:D.98, A:D.98 pi-Cation interactions: J:K.96 3LS.2: 7 residues within 4Å: Chain A: V.66 Chain B: V.66, G.67 Chain E: V.66, K.97 Chain I: K.97 Chain J: V.66 7 PLIP interactions: 1 interactions with chain I, 2 interactions with chain J, 2 interactions with chain A, 1 interactions with chain E, 1 interactions with chain B Salt bridges: I:K.97, J:K.97, A:K.97, E:K.97 Hydrophobic interactions: J:V.66, A:V.66, B:V.66 3LS.3: 17 residues within 4Å: Chain C: G.86, I.88, K.96, D.98 Chain D: G.86, I.88, K.96 Chain F: G.86, I.88, K.96 Chain G: G.86, I.88, K.96, D.98 Chain H: G.86, I.88, K.96 13 PLIP interactions: 2 interactions with chain H, 3 interactions with chain C, 4 interactions with chain G, 3 interactions with chain F, 1 interactions with chain D Hydrophobic interactions: H:I.88, C:I.88, G:I.88, F:I.88 Salt bridges: H:K.96, C:K.96, G:K.96, G:K.96, F:K.96, D:K.96 Hydrogen bonds: C:D.98, G:D.98 pi-Cation interactions: F:K.96 3LS.4: 7 residues within 4Å: Chain C: V.66 Chain D: V.66 Chain F: V.66 Chain G: V.66, K.97 Chain H: V.66, K.97 8 PLIP interactions: 2 interactions with chain G, 1 interactions with chain H, 2 interactions with chain C, 1 interactions with chain D, 2 interactions with chain F Hydrophobic interactions: G:V.66, C:V.66, D:V.66, F:V.66 Salt bridges: G:K.97, H:K.97, C:K.97, F:K.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, K. et al., Binding adaptability of chemical ligands to polymorphic alpha-synuclein amyloid fibrils. Proc.Natl.Acad.Sci.USA (2024)

Release Date

2024-09-11

Peptides

Alpha-synuclein: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Alpha-synuclein

Related Entries With Identical Sequence