SMTL ID : 8x7u.1

MCM in complex with dsDNA in presence of ATP.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: S.336 Ligands: ATP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.336 MG.3: 2 residues within 4Å: Chain B: S.336 Ligands: ATP.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:S.336 MG.7: 2 residues within 4Å: Chain E: S.336 Ligands: ATP.8 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:S.336

5 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 19 residues within 4Å: Chain A: A.290, I.291, W.292, D.330, P.331, G.332, V.333, A.334, K.335, S.336, Q.337, R.340, N.437, I.481, I.485 Chain D: A.554, R.555, E.558 Ligands: MG.1 18 PLIP interactions: 15 interactions with chain A, 3 interactions with chain D Hydrogen bonds: A:W.292, A:W.292, A:D.330, A:G.332, A:V.333, A:A.334, A:K.335, A:S.336, A:Q.337, A:Q.337, A:Q.337, A:N.437 Salt bridges: A:K.335, A:K.335, A:R.340, D:R.555, D:R.555, D:R.555 ATP.4: 17 residues within 4Å: Chain A: A.554, R.555, E.558 Chain B: A.290, I.291, W.292, P.331, G.332, V.333, A.334, K.335, S.336, Q.337, N.437, I.481, I.485 Ligands: MG.3 16 PLIP interactions: 14 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:W.292, B:W.292, B:G.332, B:V.333, B:A.334, B:K.335, B:S.336, B:Q.337, B:Q.337, B:Q.337, B:N.437, B:N.437 Salt bridges: B:K.335, B:K.335, A:R.555, A:R.555 ATP.5: 15 residues within 4Å: Chain B: A.554, R.555, E.558 Chain C: A.290, I.291, W.292, P.331, G.332, V.333, A.334, K.335, S.336, Q.337, I.481, I.485 14 PLIP interactions: 3 interactions with chain B, 11 interactions with chain C Hydrogen bonds: B:E.558, C:W.292, C:W.292, C:G.332, C:V.333, C:A.334, C:K.335, C:S.336, C:S.336, C:Q.337, C:Q.337 Salt bridges: B:R.555, B:R.555, C:K.335 ATP.6: 16 residues within 4Å: Chain D: I.291, W.292, D.330, P.331, G.332, V.333, A.334, K.335, S.336, Q.337, N.437, I.481, I.485 Chain F: A.554, R.555, E.558 13 PLIP interactions: 11 interactions with chain D, 2 interactions with chain F Hydrogen bonds: D:W.292, D:W.292, D:G.332, D:V.333, D:A.334, D:K.335, D:S.336, D:N.437, D:N.437 Salt bridges: D:K.335, D:K.335, F:R.555, F:R.555 ATP.8: 15 residues within 4Å: Chain C: A.554, R.555 Chain E: I.291, W.292, D.330, P.331, G.332, V.333, A.334, K.335, S.336, Q.337, I.481, I.485 Ligands: MG.7 11 PLIP interactions: 9 interactions with chain E, 2 interactions with chain C Hydrogen bonds: E:W.292, E:W.292, E:G.332, E:V.333, E:A.334, E:S.336, E:S.336, E:Q.337, C:R.555 Salt bridges: E:K.335, C:R.555

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, J. et al., MCM in complex with dsDNA in presence of ATP. To Be Published

Release Date

2024-01-17

Peptides

mini-chromosome maintenance complex 3: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
C

C
B

D
E

E
A

F
F

mini-chromosome maintenance complex 3

Related Entries With Identical Sequence