SMTL ID : 8x85.1

Structure of leptin-LepR dimer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 2 residues within 4Å: Chain A: N.327, F.374 No protein-ligand interaction detected (PLIP)

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.2: 5 residues within 4Å: Chain B: G.325, N.327, F.374, N.375 Ligands: NAG.11 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.325, B:N.375

11 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)(Non-functional Binders)

NAG.3: 5 residues within 4Å: Chain A: N.730, S.731, S.732, C.733 Chain B: H.780 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain A: K.516, N.604 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.516 Hydrogen bonds: A:N.604 NAG.5: 4 residues within 4Å: Chain A: F.374, N.375, L.376, N.377 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.375 NAG.6: 3 residues within 4Å: Chain A: T.441, R.494, N.496 No protein-ligand interaction detected (PLIP) NAG.7: 1 residues within 4Å: Chain A: N.708 No protein-ligand interaction detected (PLIP) NAG.8: 4 residues within 4Å: Chain B: L.729, N.730, S.732, C.733 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.732, B:S.732 NAG.9: 2 residues within 4Å: Chain B: L.518, N.604 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.518 Hydrogen bonds: B:N.604 NAG.10: 4 residues within 4Å: Chain B: F.374, N.375, L.376, N.377 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.377 NAG.11: 2 residues within 4Å: Ligands: NAG-FUC.2, NAG-FUC.2 No protein-ligand interaction detected (PLIP) NAG.12: 3 residues within 4Å: Chain B: R.494, N.496, S.501 No protein-ligand interaction detected (PLIP) NAG.13: 2 residues within 4Å: Chain B: N.706, N.708 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, Y.F. et al., Structural plasticity of human leptin binding to its receptor LepR. Hlife (2023)

Release Date

2024-08-07

Peptides

Leptin receptor: AB
Leptin: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Leptin receptor

Leptin

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