SMTL ID : 8x8i.1

The structure of AbBioc in complex with SAM cofactor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.54 Å

Oligo State

homo-tetramer

Ligands

4 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 18 residues within 4Å: Chain A: Q.26, C.30, G.52, C.53, G.54, S.55, N.57, N.74, D.75, L.76, G.95, D.96, V.97, G.112, S.113, A.114, W.117, M.118 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:C.53, A:N.57, A:L.76, A:D.96, A:D.96, A:V.97, A:G.112 Water bridges: A:L.58, A:G.112 SAM.2: 18 residues within 4Å: Chain B: Q.26, C.30, G.52, C.53, G.54, G.56, N.57, N.74, D.75, L.76, G.95, D.96, V.97, G.112, S.113, A.114, W.117, M.118 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:C.53, B:S.55, B:G.56, B:N.57, B:L.76, B:D.96, B:V.97 Water bridges: B:L.58, B:L.58, B:G.112 SAM.3: 19 residues within 4Å: Chain C: C.30, G.52, C.53, G.54, S.55, G.56, N.57, N.74, D.75, L.76, Y.77, G.95, D.96, V.97, G.112, S.113, A.114, W.117, M.118 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:C.53, C:S.55, C:G.56, C:N.57, C:L.76, C:D.96, C:V.97 Water bridges: C:L.58, C:L.58, C:G.112 SAM.4: 19 residues within 4Å: Chain D: Q.26, C.30, G.52, C.53, G.54, S.55, G.56, N.57, N.74, D.75, L.76, G.95, D.96, V.97, G.112, S.113, A.114, W.117, M.118 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:C.53, D:S.55, D:S.55, D:G.56, D:N.57, D:L.76, D:D.96, D:D.96, D:V.97 Water bridges: D:L.58, D:L.58, D:G.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, Z. et al., A bacterial methyltransferase that initiates biotin synthesis, an attractive anti-ESKAPE druggable pathway. Sci Adv (2024)

Release Date

2024-11-13

Peptides

Malonyl-[acyl-carrier protein] O-methyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Malonyl-[acyl-carrier protein] O-methyltransferase

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