SMTL ID : 8x8k.3 (3 other biounits)

Crystal structure of STBD1 CBM20 domain in complex with maltotetraose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x GLC- GLC- GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose

GLC-GLC-GLC-GLC.1: 7 residues within 4Å: Chain A: H.12, Y.13, V.14, R.74, W.95, W.96, I.98 No protein-ligand interaction detected (PLIP) GLC-GLC-GLC-GLC.2: 4 residues within 4Å: Chain A: W.34, K.63, W.75, N.80 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL

GOL.3: 4 residues within 4Å: Chain A: R.8, H.41, N.43, H.50 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.8, A:H.41, A:N.43, A:H.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Decoding the molecular mechanism of selective autophagy of glycogen mediated by autophagy receptor STBD1. Proc.Natl.Acad.Sci.USA (2024)

Release Date

2024-09-18

Peptides

Starch-binding domain-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Starch-binding domain-containing protein 1

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