SMTL ID : 8xcp.1

Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the initial stage of reaction

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 12 residues within 4Å: Chain A: G.219, Y.220, G.221, N.222, A.223, D.244, S.245, K.264, N.281, A.295, A.296, I.297 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Y.220, A:Y.220, A:N.222, A:A.223, A:D.244, A:S.245, A:S.245, A:S.245 Salt bridges: A:K.264

1 x GGL: GAMMA-L-GLUTAMIC ACID(Non-covalent)

GGL.2: 9 residues within 4Å: Chain A: K.69, G.71, M.90, K.93, K.105, A.143, P.144, D.145, S.351 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.93, A:K.93, A:S.351 Salt bridges: A:K.69, A:K.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wakabayashi, T. et al., CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep (2024)

Release Date

2023-12-27

Peptides

Glutamate dehydrogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glutamate dehydrogenase

Related Entries With Identical Sequence