SMTL ID : 8xdn.1

TOM complex with small molecule

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-mer

Ligands

1 x FUD: D-fructose(Non-covalent)

FUD.1: 10 residues within 4Å: Chain A: N.311, L.312, L.328, E.329, K.330, L.339, L.341 Chain D: E.102, K.105 Ligands: PC1.2 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain D Hydrogen bonds: A:N.311, A:E.329, A:L.341, D:K.105, D:K.105

1 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PC1.2: 30 residues within 4Å: Chain A: V.101, A.326, L.339, L.341, G.342, A.343 Chain B: V.101, L.103, A.326, L.328, K.330, L.332, L.339, L.341, G.342, A.343, L.358 Chain C: M.93, I.94, L.97, E.102, K.105, E.109 Chain D: M.93, I.94, L.97, P.98, F.101, E.102 Ligands: FUD.1 18 PLIP interactions: 4 interactions with chain C, 9 interactions with chain B, 3 interactions with chain A, 2 interactions with chain D Hydrophobic interactions: C:L.97, B:V.101, B:L.103, B:L.328, B:L.328, B:K.330, B:L.341, B:A.343, B:L.358, A:V.101, A:L.339, A:A.343, D:L.97, D:F.101 Salt bridges: C:K.105, C:K.105, C:E.109, B:K.330

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, W.H. et al., TOM complex with small molecule. To Be Published

Release Date

2025-06-11

Peptides

Mitochondrial import receptor subunit TOM40 homolog: AB
Mitochondrial import receptor subunit TOM22 homolog: CD
Mitochondrial import receptor subunit TOM6 homolog: EF
Mitochondrial import receptor subunit TOM7 homolog: GH
Mitochondrial import receptor subunit TOM5 homolog: IJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Membrane

We predict this structure to be a membrane protein.
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Mitochondrial import receptor subunit TOM40 homolog

Mitochondrial import receptor subunit TOM22 homolog

Mitochondrial import receptor subunit TOM6 homolog

Mitochondrial import receptor subunit TOM7 homolog

Mitochondrial import receptor subunit TOM5 homolog

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