SMTL ID : 8xfc.1

Cryo-EM structure of the ATP-bound Mtb DppABCD with the D445A mutation of DppA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE

ATP.1: 10 residues within 4Å: Chain C: Y.291, S.304, S.326, G.327, S.328, G.329, K.330, S.331, T.332, Q.457 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:S.304, C:G.327, C:S.328, C:G.329, C:K.330, C:S.331, C:S.331, C:T.332, C:Q.457, C:Q.457 Salt bridges: C:K.330, C:K.330 pi-Stacking: C:Y.291, C:Y.291 ATP.2: 10 residues within 4Å: Chain C: F.18, E.43, S.44, G.45, S.46, G.47, K.48, S.49, T.50, Q.179 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:G.45, C:G.45, C:G.47, C:K.48, C:S.49, C:S.49, C:T.50, C:T.50, C:Q.179, C:Q.179 Salt bridges: C:K.48, C:K.48 pi-Stacking: C:F.18, C:F.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, T. et al., Cryo-EM structure of the ATP-bound Mtb DppABCD with the D445A mutation of DppA. To Be Published

Release Date

2024-09-18

Peptides

Probable dipeptide-transport integral membrane protein ABC transporter DppB: A
Probable dipeptide-transport integral membrane protein ABC transporter DppC: B
Probable dipeptide-transport ATP-binding protein ABC transporter DppD: C
Probable periplasmic dipeptide-binding lipoprotein DppA: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
D

D
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Probable dipeptide-transport integral membrane protein ABC transporter DppB

Probable dipeptide-transport integral membrane protein ABC transporter DppC

Probable dipeptide-transport ATP-binding protein ABC transporter DppD

Probable periplasmic dipeptide-binding lipoprotein DppA

Related Entries With Identical Sequence