SMTL ID : 8xfg.1

Cryo-EM structure of integrin ITGAV, ITGB3 and CYCLO (RGDFK) complex, conformation 1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x 01: 2-[(2~{R},5~{R},8~{S},11~{S})-8-(4-azanylbutyl)-11-(3-carbamimidamidopropyl)-3,6,9,12,15-pentakis(oxidanylidene)-5-(phenylmethyl)-1,4,7,10,13-pentazacyclopentadec-2-yl]ethanoic acid

01.1: 13 residues within 4Å: Chain A: D.180, Y.208, Q.210, A.245, D.248 Chain B: S.147, Y.148, S.149, D.152, N.241, R.242, A.244, E.246 12 PLIP interactions: 6 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:Y.208, B:Y.148 Hydrogen bonds: A:Y.208, A:Q.210, A:Q.244, B:S.147, B:Y.148, B:S.149, B:N.241, B:D.243 Salt bridges: A:D.180, A:D.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xi, Z., Cryo-EM structure of integrin ITGAV, ITGB3 and CYCLO (RGDFK) complex, conformation 1. To Be Published

Release Date

2024-12-18

Peptides

Integrin alpha-V: A
Integrin beta-3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Integrin alpha-V

Integrin beta-3

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