SMTL ID : 8xga.9 (10 other biounits)

Crystal structure of human Golgi resident glutaminyl cyclase in complex with (Z)-3-((1H-benzo[d]imidazol-5-yl)methylene)-4-((tetrahydro-2H-pyran-4-yl)oxy)indolin-2-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.54 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.117, E.157, W.281, H.282 Ligands: 01.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.117, A:E.157, A:H.282

1 x 01: (3~{Z})-3-(1~{H}-benzimidazol-5-ylmethylidene)-4-(oxan-4-yloxy)-1~{H}-indol-2-one

01.2: 15 residues within 4Å: Chain A: H.99, D.117, E.156, E.157, E.161, W.162, D.200, L.201, V.255, E.256, D.257, F.277, W.281, H.282 Ligands: ZN.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.255, A:F.277, A:W.281 Hydrogen bonds: A:D.117 pi-Stacking: A:W.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mou, J. et al., X-ray Structure-Guided Discovery of a Potent Benzimidazole Glutaminyl Cyclase Inhibitor That Shows Activity in a Parkinson's Disease Mouse Model. J.Med.Chem. (2024)

Release Date

2024-06-12

Peptides

Glutaminyl-peptide cyclotransferase-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

Glutaminyl-peptide cyclotransferase-like protein

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