SMTL ID : 8xgb.1

Crystal structure of human secretory glutaminyl cyclase in complex with (S)-1-(1H-benzo[d]imidazol-5-yl)-5-(4-propoxyphenyl)imidazolidin-2-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.24 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.129, E.172, W.299, H.300 Ligands: 01.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.129, A:E.172, A:E.172, A:H.300

1 x 01: (5~{S})-1-(3~{H}-benzimidazol-5-yl)-5-(4-propoxyphenyl)imidazolidin-2-one

01.2: 16 residues within 4Å: Chain A: H.110, D.129, E.171, E.172, W.177, D.218, I.273, Q.274, D.275, I.291, P.294, F.295, P.296, W.299, H.300 Ligands: ZN.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.295, A:F.295, A:F.295 Water bridges: A:Q.274 pi-Stacking: A:W.177, A:W.299, A:W.299, A:W.299, A:W.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mou, J. et al., X-ray Structure-Guided Discovery of a Potent Benzimidazole Glutaminyl Cyclase Inhibitor That Shows Activity in a Parkinson's Disease Mouse Model. J.Med.Chem. (2024)

Release Date

2024-06-12

Peptides

Glutaminyl-peptide cyclotransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Glutaminyl-peptide cyclotransferase