SMTL ID : 8xgl.1

Structure of the Magnaporthe oryzae effector NIS1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: S.13, M.14, S.15, N.31, G.84, T.85 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.31 Water bridges: A:S.13, A:S.13, A:T.85, A:T.85 NAG.2: 6 residues within 4Å: Chain A: L.53, N.54, T.55, L.102, I.104, N.123 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.53, A:T.55, A:L.102 Hydrogen bonds: A:N.123 Water bridges: A:N.123, A:N.123, A:N.123 NAG.5: 5 residues within 4Å: Chain B: S.13, S.15, N.31, G.84, T.85 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.13, B:S.13, B:N.31, B:N.31 NAG.6: 4 residues within 4Å: Chain B: L.53, T.55, L.102, N.123 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:T.55, B:L.102 Hydrogen bonds: B:T.55, B:N.123 Water bridges: B:N.123

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: N.54, S.56, A.57 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.54

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: H.7, H.8, H.9, I.34, P.82 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.7, A:H.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, R. et al., Understanding and manipulating the recognition of necrosis-inducing secreted protein 1 (NIS1) by BRI1-associated receptor kinase 1 (BAK1). Int.J.Biol.Macromol. (2024)

Release Date

2024-09-18

Peptides

Necrosis-inducing secreted protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Necrosis-inducing secreted protein 1