SMTL ID : 8xh8.1

Human Cx36/GJD2 (Ala14-deleted mutant) gap junction channel in porcine brain lipids

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-12-mer

Ligands

72 x MC3: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)(Non-functional Binders)

MC3.1: 10 residues within 4Å: Chain A: F.222, S.223, T.250, V.254, F.257, A.258, G.261, I.262 Ligands: MC3.2, MC3.3 Ligand excluded by PLIP MC3.2: 9 residues within 4Å: Chain A: T.247, T.250, V.251, V.254, F.255 Ligands: MC3.1, MC3.3, MC3.4, MC3.11 Ligand excluded by PLIP MC3.3: 4 residues within 4Å: Chain A: V.254, A.258 Ligands: MC3.1, MC3.2 Ligand excluded by PLIP MC3.4: 10 residues within 4Å: Chain A: V.28, V.29, F.32, F.255, A.258, V.259, I.262 Chain B: F.80, M.84 Ligands: MC3.2 Ligand excluded by PLIP MC3.5: 10 residues within 4Å: Chain A: P.71, I.72, R.76, Y.77, F.80, L.219 Chain F: V.40, V.251 Ligands: MC3.6, MC3.32 Ligand excluded by PLIP MC3.6: 8 residues within 4Å: Chain A: Y.77, L.208, G.211, F.212, G.215, F.218, L.219 Ligands: MC3.5 Ligand excluded by PLIP MC3.7: 10 residues within 4Å: Chain B: F.222, S.223, T.250, V.254, F.257, A.258, G.261, I.262 Ligands: MC3.8, MC3.9 Ligand excluded by PLIP MC3.8: 9 residues within 4Å: Chain B: T.247, T.250, V.251, V.254, F.255 Ligands: MC3.7, MC3.9, MC3.10, MC3.17 Ligand excluded by PLIP MC3.9: 4 residues within 4Å: Chain B: V.254, A.258 Ligands: MC3.7, MC3.8 Ligand excluded by PLIP MC3.10: 10 residues within 4Å: Chain B: V.28, V.29, F.32, F.255, A.258, V.259, I.262 Chain C: F.80, M.84 Ligands: MC3.8 Ligand excluded by PLIP MC3.11: 10 residues within 4Å: Chain A: V.40, V.251 Chain B: P.71, I.72, R.76, Y.77, F.80, L.219 Ligands: MC3.2, MC3.12 Ligand excluded by PLIP MC3.12: 8 residues within 4Å: Chain B: Y.77, L.208, G.211, F.212, G.215, F.218, L.219 Ligands: MC3.11 Ligand excluded by PLIP MC3.13: 10 residues within 4Å: Chain C: F.222, S.223, T.250, V.254, F.257, A.258, G.261, I.262 Ligands: MC3.14, MC3.15 Ligand excluded by PLIP MC3.14: 9 residues within 4Å: Chain C: T.247, T.250, V.251, V.254, F.255 Ligands: MC3.13, MC3.15, MC3.16, MC3.23 Ligand excluded by PLIP MC3.15: 4 residues within 4Å: Chain C: V.254, A.258 Ligands: MC3.13, MC3.14 Ligand excluded by PLIP MC3.16: 10 residues within 4Å: Chain C: V.28, V.29, F.32, F.255, A.258, V.259, I.262 Chain D: F.80, M.84 Ligands: MC3.14 Ligand excluded by PLIP MC3.17: 10 residues within 4Å: Chain B: V.40, V.251 Chain C: P.71, I.72, R.76, Y.77, F.80, L.219 Ligands: MC3.8, MC3.18 Ligand excluded by PLIP MC3.18: 8 residues within 4Å: Chain C: Y.77, L.208, G.211, F.212, G.215, F.218, L.219 Ligands: MC3.17 Ligand excluded by PLIP MC3.19: 10 residues within 4Å: Chain D: F.222, S.223, T.250, V.254, F.257, A.258, G.261, I.262 Ligands: MC3.20, MC3.21 Ligand excluded by PLIP MC3.20: 9 residues within 4Å: Chain D: T.247, T.250, V.251, V.254, F.255 Ligands: MC3.19, MC3.21, MC3.22, MC3.29 Ligand excluded by PLIP MC3.21: 4 residues within 4Å: Chain D: V.254, A.258 Ligands: MC3.19, MC3.20 Ligand excluded by PLIP MC3.22: 11 residues within 4Å: Chain D: V.28, V.29, F.32, F.255, A.258, V.259, I.262 Chain E: F.80, M.84, T.87 Ligands: MC3.20 Ligand excluded by PLIP MC3.23: 9 residues within 4Å: Chain C: V.40, V.251 Chain D: P.71, I.72, R.76, Y.77, F.80 Ligands: MC3.14, MC3.24 Ligand excluded by PLIP MC3.24: 8 residues within 4Å: Chain D: Y.77, L.208, G.211, F.212, G.215, F.218, L.219 Ligands: MC3.23 Ligand excluded by PLIP MC3.25: 10 residues within 4Å: Chain E: F.222, S.223, T.250, V.254, F.257, A.258, G.261, I.262 Ligands: MC3.26, MC3.27 Ligand excluded by PLIP MC3.26: 9 residues within 4Å: Chain E: T.247, T.250, V.251, V.254, F.255 Ligands: MC3.25, MC3.27, MC3.28, MC3.35 Ligand excluded by PLIP MC3.27: 4 residues within 4Å: Chain E: V.254, A.258 Ligands: MC3.25, MC3.26 Ligand excluded by PLIP MC3.28: 10 residues within 4Å: Chain E: V.28, V.29, F.32, F.255, A.258, V.259, I.262 Chain F: F.80, M.84 Ligands: MC3.26 Ligand excluded by PLIP MC3.29: 10 residues within 4Å: Chain D: V.40, V.251 Chain E: P.71, I.72, R.76, Y.77, F.80, L.219 Ligands: MC3.20, MC3.30 Ligand excluded by PLIP MC3.30: 8 residues within 4Å: Chain E: Y.77, L.208, G.211, F.212, G.215, F.218, L.219 Ligands: MC3.29 Ligand excluded by PLIP MC3.31: 10 residues within 4Å: Chain F: F.222, S.223, T.250, V.254, F.257, A.258, G.261, I.262 Ligands: MC3.32, MC3.33 Ligand excluded by PLIP MC3.32: 9 residues within 4Å: Chain F: T.247, T.250, V.251, V.254, F.255 Ligands: MC3.5, MC3.31, MC3.33, MC3.34 Ligand excluded by PLIP MC3.33: 4 residues within 4Å: Chain F: V.254, A.258 Ligands: MC3.31, MC3.32 Ligand excluded by PLIP MC3.34: 10 residues within 4Å: Chain A: F.80, M.84 Chain F: V.28, V.29, F.32, F.255, A.258, V.259, I.262 Ligands: MC3.32 Ligand excluded by PLIP MC3.35: 10 residues within 4Å: Chain E: V.40, V.251 Chain F: P.71, I.72, R.76, Y.77, F.80, L.219 Ligands: MC3.26, MC3.36 Ligand excluded by PLIP MC3.36: 8 residues within 4Å: Chain F: Y.77, L.208, G.211, F.212, G.215, F.218, L.219 Ligands: MC3.35 Ligand excluded by PLIP MC3.37: 10 residues within 4Å: Chain G: F.222, S.223, T.250, V.254, F.257, A.258, G.261, I.262 Ligands: MC3.38, MC3.39 Ligand excluded by PLIP MC3.38: 9 residues within 4Å: Chain G: T.247, T.250, V.251, V.254, F.255 Ligands: MC3.37, MC3.39, MC3.40, MC3.47 Ligand excluded by PLIP MC3.39: 4 residues within 4Å: Chain G: V.254, A.258 Ligands: MC3.37, MC3.38 Ligand excluded by PLIP MC3.40: 10 residues within 4Å: Chain G: V.28, V.29, F.32, F.255, A.258, V.259, I.262 Chain H: F.80, M.84 Ligands: MC3.38 Ligand excluded by PLIP MC3.41: 10 residues within 4Å: Chain G: P.71, I.72, R.76, Y.77, F.80, L.219 Chain L: V.40, V.251 Ligands: MC3.42, MC3.68 Ligand excluded by PLIP MC3.42: 8 residues within 4Å: Chain G: Y.77, L.208, G.211, F.212, G.215, F.218, L.219 Ligands: MC3.41 Ligand excluded by PLIP MC3.43: 10 residues within 4Å: Chain H: F.222, S.223, T.250, V.254, F.257, A.258, G.261, I.262 Ligands: MC3.44, MC3.45 Ligand excluded by PLIP MC3.44: 9 residues within 4Å: Chain H: T.247, T.250, V.251, V.254, F.255 Ligands: MC3.43, MC3.45, MC3.46, MC3.53 Ligand excluded by PLIP MC3.45: 4 residues within 4Å: Chain H: V.254, A.258 Ligands: MC3.43, MC3.44 Ligand excluded by PLIP MC3.46: 11 residues within 4Å: Chain H: V.28, V.29, F.32, F.255, A.258, V.259, I.262 Chain I: F.80, M.84, T.87 Ligands: MC3.44 Ligand excluded by PLIP MC3.47: 10 residues within 4Å: Chain G: V.40, V.251 Chain H: P.71, I.72, R.76, Y.77, F.80, L.219 Ligands: MC3.38, MC3.48 Ligand excluded by PLIP MC3.48: 8 residues within 4Å: Chain H: Y.77, L.208, G.211, F.212, G.215, F.218, L.219 Ligands: MC3.47 Ligand excluded by PLIP MC3.49: 10 residues within 4Å: Chain I: F.222, S.223, T.250, V.254, F.257, A.258, G.261, I.262 Ligands: MC3.50, MC3.51 Ligand excluded by PLIP MC3.50: 9 residues within 4Å: Chain I: T.247, T.250, V.251, V.254, F.255 Ligands: MC3.49, MC3.51, MC3.52, MC3.59 Ligand excluded by PLIP MC3.51: 4 residues within 4Å: Chain I: V.254, A.258 Ligands: MC3.49, MC3.50 Ligand excluded by PLIP MC3.52: 10 residues within 4Å: Chain I: V.28, V.29, F.32, F.255, A.258, V.259, I.262 Chain J: F.80, M.84 Ligands: MC3.50 Ligand excluded by PLIP MC3.53: 10 residues within 4Å: Chain H: V.40, V.251 Chain I: P.71, I.72, R.76, Y.77, F.80, L.219 Ligands: MC3.44, MC3.54 Ligand excluded by PLIP MC3.54: 8 residues within 4Å: Chain I: Y.77, L.208, G.211, F.212, G.215, F.218, L.219 Ligands: MC3.53 Ligand excluded by PLIP MC3.55: 10 residues within 4Å: Chain J: F.222, S.223, T.250, V.254, F.257, A.258, G.261, I.262 Ligands: MC3.56, MC3.57 Ligand excluded by PLIP MC3.56: 9 residues within 4Å: Chain J: T.247, T.250, V.251, V.254, F.255 Ligands: MC3.55, MC3.57, MC3.58, MC3.65 Ligand excluded by PLIP MC3.57: 4 residues within 4Å: Chain J: V.254, A.258 Ligands: MC3.55, MC3.56 Ligand excluded by PLIP MC3.58: 10 residues within 4Å: Chain J: V.28, V.29, F.32, F.255, A.258, V.259, I.262 Chain K: F.80, M.84 Ligands: MC3.56 Ligand excluded by PLIP MC3.59: 10 residues within 4Å: Chain I: V.40, V.251 Chain J: P.71, I.72, R.76, Y.77, F.80, L.219 Ligands: MC3.50, MC3.60 Ligand excluded by PLIP MC3.60: 8 residues within 4Å: Chain J: Y.77, L.208, G.211, F.212, G.215, F.218, L.219 Ligands: MC3.59 Ligand excluded by PLIP MC3.61: 10 residues within 4Å: Chain K: F.222, S.223, T.250, V.254, F.257, A.258, G.261, I.262 Ligands: MC3.62, MC3.63 Ligand excluded by PLIP MC3.62: 9 residues within 4Å: Chain K: T.247, T.250, V.251, V.254, F.255 Ligands: MC3.61, MC3.63, MC3.64, MC3.71 Ligand excluded by PLIP MC3.63: 4 residues within 4Å: Chain K: V.254, A.258 Ligands: MC3.61, MC3.62 Ligand excluded by PLIP MC3.64: 11 residues within 4Å: Chain K: V.28, V.29, F.32, F.255, A.258, V.259, I.262 Chain L: F.80, M.84, T.87 Ligands: MC3.62 Ligand excluded by PLIP MC3.65: 9 residues within 4Å: Chain J: V.40, V.251 Chain K: P.71, I.72, R.76, Y.77, F.80 Ligands: MC3.56, MC3.66 Ligand excluded by PLIP MC3.66: 8 residues within 4Å: Chain K: Y.77, L.208, G.211, F.212, G.215, F.218, L.219 Ligands: MC3.65 Ligand excluded by PLIP MC3.67: 10 residues within 4Å: Chain L: F.222, S.223, T.250, V.254, F.257, A.258, G.261, I.262 Ligands: MC3.68, MC3.69 Ligand excluded by PLIP MC3.68: 9 residues within 4Å: Chain L: T.247, T.250, V.251, V.254, F.255 Ligands: MC3.41, MC3.67, MC3.69, MC3.70 Ligand excluded by PLIP MC3.69: 4 residues within 4Å: Chain L: V.254, A.258 Ligands: MC3.67, MC3.68 Ligand excluded by PLIP MC3.70: 10 residues within 4Å: Chain G: F.80, M.84 Chain L: V.28, V.29, F.32, F.255, A.258, V.259, I.262 Ligands: MC3.68 Ligand excluded by PLIP MC3.71: 10 residues within 4Å: Chain K: V.40, V.251 Chain L: P.71, I.72, R.76, Y.77, F.80, L.219 Ligands: MC3.62, MC3.72 Ligand excluded by PLIP MC3.72: 8 residues within 4Å: Chain L: Y.77, L.208, G.211, F.212, G.215, F.218, L.219 Ligands: MC3.71 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, H.J. et al., Mefloquine-induced conformational shift in Cx36 N-terminal helix leading to channel closure mediated by lipid bilayer. Nat Commun (2024)

Release Date

2024-11-06

Peptides

Gap junction delta-2 protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

Membrane

We predict this structure to be a membrane protein.
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Gap junction delta-2 protein

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