SMTL ID : 8xjq.1

Crystal structure of a sulfotransferase S4 in complex with PAP and PNPS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

2 x NPO: P-NITROPHENOL(Non-covalent)

NPO.1: 12 residues within 4Å: Chain A: V.21, P.47, M.81, K.107, H.109, F.140, F.143, E.150, A.169, Y.170 Ligands: PPS.2, NPO.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.21, A:P.47, A:F.140, A:Y.170 Hydrogen bonds: A:H.109 pi-Stacking: A:F.143 NPO.4: 10 residues within 4Å: Chain A: V.76, F.84, M.90, F.143, N.147, F.149, V.244, L.248, M.249 Ligands: NPO.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.76, A:F.84, A:F.149, A:V.244 Hydrogen bonds: A:N.147

1 x PPS: 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE(Non-covalent)

PPS.2: 23 residues within 4Å: Chain A: P.47, K.48, S.49, G.50, T.51, T.52, W.53, K.107, H.109, R.131, S.139, F.143, Y.194, T.228, S.229, F.230, M.233, F.256, M.257, R.258, K.259, G.260 Ligands: NPO.1 31 PLIP interactions: 31 interactions with chain A Hydrogen bonds: A:K.48, A:S.49, A:G.50, A:T.51, A:T.51, A:T.52, A:T.52, A:T.52, A:R.131, A:S.139, A:Y.194, A:T.228, A:R.258, A:K.259, A:G.260 Water bridges: A:W.53, A:W.53, A:R.131, A:R.131, A:S.139, A:F.230, A:I.261, A:I.261 Salt bridges: A:K.48, A:K.48, A:K.107, A:H.109, A:R.131, A:R.258 pi-Stacking: A:W.53, A:F.230

1 x 4NS: 4-nitrophenyl sulfate(Non-covalent)

4NS.3: 8 residues within 4Å: Chain A: N.132, A.133, K.134, F.277, D.278, Y.281, F.292, T.294 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.294 Water bridges: A:K.134, A:K.134, A:T.294 pi-Stacking: A:Y.281

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, J. et al., Crystal structure of a sulfotransferase S4 in complex with PAP and PNPS. To Be Published

Release Date

2024-12-25

Peptides

Sulfotransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sulfotransferase

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